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Flash entropy search to query all mass spectral libraries in real time
Public repositories of metabolomics mass spectra encompass more than 1 billion entries. With open search, dot product or entropy …
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Alternative Identification of Glycosides Using MS/MS Matching with an In Silico-Modified Aglycone Mass Spectra Library
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Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification
Compound identification in small-molecule research, such as untargeted metabolomics or exposome research, relies on matching tandem …
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Coupling proteomics and metabolomics for the unsupervised identification of protein–metabolite interactions in Chaetomium thermophilum
Protein–metabolite interactions play an important role in the cell’s metabolism and many methods have been developed to screen them in …
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Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features
MOTIVATION: Untargeted mass spectrometry (MS/MS) is a powerful method for detecting metabolites in biological samples. However, fast …
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Capturing protein communities by structural proteomics in a thermophilic eukaryote
Abstract The arrangement of proteins into complexes is a key organizational principle for many cellular functions. Although the …
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Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files
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pelo Is Required for High Efficiency Viral Replication
Author Summary Viruses often can highly efficiently utilize the host system to make huge amounts of viral proteins for their …
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Regulator of G-Protein Signaling 19 (RGS19) and Its Partner Gα-Inhibiting Activity Polypeptide 3 (GNAI3) Are Required for zVAD-Induced Autophagy and Cell Death in L929 Cells
Autophagy has diverse biological functions and is involved in many biological processes. The L929 cell death induced by the pan-caspase …
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Quantitative phosphoproteomic analysis of RIP3-dependent protein phosphorylation in the course of TNF-induced necroptosis
Tumor necrosis factor (TNF) induced cell death in murine fibrosarcoma L929 cells is a model system in studying programed necrosis (also …
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